How do I install BioSymphony Structure Factory?

Install BioSymphony Structure Factory in your harness: Codex — codex plugin marketplace add BioSymphony/structure-factory; Claude Code — /plugin marketplace add BioSymphony/structure-factory; Any agent — npx skills@1.7.4 add BioSymphony/structure-factory. Full step-by-step guidance is on the HOL plugin page.

How do I install BioSymphony Structure Factory in Codex?

To install BioSymphony Structure Factory in Codex, start with codex plugin marketplace add BioSymphony/structure-factory. The complete step-by-step install guide for Codex is on the HOL plugin page.

How do I install BioSymphony Structure Factory in Claude Code?

To install BioSymphony Structure Factory in Claude Code, start with /plugin marketplace add BioSymphony/structure-factory. The complete step-by-step install guide for Claude Code is on the HOL plugin page.

How is the Trust Score for BioSymphony Structure Factory computed?

BioSymphony Structure Factory has a HOL Trust Score of 60 out of 100. The score is a weighted sum of six components from a static scan of the source, capped for high-severity findings and adjusted by two disclosed policies. Memberships and payments are not inputs, and a scan is not a safety guarantee. Full breakdown: https://hol.org/registry/plugins/biosymphony%2Fbiosymphony-structure-factory/trust

Who publishes BioSymphony Structure Factory?

BioSymphony Structure Factory is published by BioSymphony and listed on HOL.

BioSymphony Structure Factory

biosymphony/biosymphony-structure-factory · v0.1.0 · Development & Workflow

by BioSymphonyScan grade: caution

Turn structural biology questions into agent-ready campaigns for protein design, structure prediction, and model comparison, with reproducible workflows and verifiable results

Install Source Claim this plugin

Follow0

Trust Score60 Security scan59 Components2

Protect this install with HOL Guard

Guard checks the skills and MCP servers a plugin adds on your machine and asks you before a risky action runs. The scores above are free, and no plan changes them.

Is BioSymphony Structure Factory a fit?

From the plugin's manifest and HOL's scan. Anything the plugin does not declare is shown as not declared.

Works with

Codex
Claude Code

2 skills

Before you install

Sign-in: Not declared
Declared access: Not declared
License: MIT

Check before relying on it

Some security checks did not finish: Cisco skill scan and HOL plugin scan. See the evidence
3 medium findings from the scan. See the evidence
The publisher has not verified ownership on HOL.

What is BioSymphony Structure Factory?

BioSymphony Structure Factory is a published development & workflow plugin for AI coding agents that works with Codex and Claude Code, developed by BioSymphony and distributed through the HOL AI plugin registry. Turn structural biology questions into agent-ready campaigns for protein design, structure prediction, and model comparison, with reproducible workflows and verifiable results.

Canonical slug: biosymphony/biosymphony-structure-factory
Version: v0.1.0 · updated Oct 13, 2026
Open data: entity.json (JSON-LD)

Registry snapshot

Repository: https://github.com/BioSymphony/structure-factory
Canonical profile: https://hol.org/registry/plugins/biosymphony%2Fbiosymphony-structure-factory
Owner verification: Not verified
Scanner: Registry fallback scan
Security result: Caution
Digest verified: Yes

2 bundled skillsRead, copy or download each SKILL.mdOpen skills

Trust and security

Trust & reputation

HOL Trust Score

Per-metric points (0–100 each) combined via a weighted average into the overall score.

Installability

64/100

Maintenance

55/100

MCP server setup

100/100

Plugin Security

59/100

Provenance

70/100

Publisher Quality

75/100

Provenance

Plugin root: .
Source repo: https://github.com/BioSymphony/structure-factory
Source commit: cdeb0bcbab12…
Publisher verified: No
Owner verified: Not owner verified

Continuous scanner CI not detected

This plugin remains listed. Its overall trust score is reduced by 10% because security checks are not maintained in the source repository's CI.

Optional: maintain the scanner in the source repository's CI to receive the full trust score. Listing does not require that change.

README badge not detected

Plugin owners can add the HOL badge to the repository README from Guard Plugins. Distribution, not security evidence. It adds a 2% engagement adjustment to the overall trust score and never changes the security result.

Security posture

See how the Trust Score is computed

Caution

Security result

Security score

High findings

Provider: registry-broker-fallback
Grade: F · caution
Version: Unknown

cisco-skill-scanner: unknown

Published advisories

None matched in GitHub security advisories, checked 2026-10-30. This covers published advisories only, not problems nobody has reported.

GitHub security advisories are those the source repository has published.

Findings

mediumpublishabilitypublishability.link.missing.websiteURL

websiteURL should be present for marketplace readiness.

mediumpublishabilitypublishability.link.missing.privacyPolicyURL

privacyPolicyURL should be present for marketplace readiness.

mediumpublishabilitypublishability.link.missing.termsOfServiceURL

termsOfServiceURL should be present for marketplace readiness.

lowoperational-securitysupply-chain.lockfile-missing

Repository snapshot does not include a lockfile.

infoskill-securityskill-scan.unavailable

Cisco skill scanner timed out after 60000 ms

infoskill-securityskill-scan.unavailable

Cisco skill scanner timed out after 60000 ms

Install guidance

Install in Claude Code

Install through the Claude Code plugin marketplace.

Claude Code plugin docs

Optional: install HOL Guard for Claude Code first, so it can check this plugin's tools on your machine before Claude Code uses them.

1
Add the marketplace
Run this inside a Claude Code session. It registers the marketplace manifest shipped at the repository root. If the repository ships none, add the generated entry from the Advanced section below first.
claude code
2
Find the marketplace and plugin names
The install id is <plugin-entry>@<marketplace-name>, and the marketplace name is declared inside the manifest — it can differ from the repository name. List registered marketplaces to read both names.
shell
3
Install the plugin
Substitute the plugin entry name and the marketplace name shown by the previous step.
claude code

Did setup work in Claude Code?

No setup reports for Claude Code yet. Self-reported by signed-in visitors. Copying a command is not counted, and most installs are never reported.

Attested installs: Fewer than 10 attested installs of this plugin in week 2026-W43, so no number is shown. Counted from opt-in HOL Guard install reports, once per machine and runtime, and never mixed with the answers above. How install reports work.

Loading reviews

Plugin manifest

{
  "name": "biosymphony-structure-factory",
  "version": "0.1.0",
  "description": "BioSymphony Structure Factory skills for public-safe structural biology campaign planning.",
  "author": {
    "name": "BioSymphony",
    "url": "https://github.com/BioSymphony"
  },
  "homepage": "https://github.com/BioSymphony/structure-factory",
  "repository": "https://github.com/BioSymphony/structure-factory",
  "license": "MIT",
  "keywords": [
    "structural-biology",
    "campaign-planning",
    "agents"
  ],
  "skills": "./",
  "interface": {
    "displayName": "BioSymphony Structure Factory",
    "developerName": "BioSymphony",
    "shortDescription": "Structural biology campaigns",
    "longDescription": "Public-safe Structure Factory skills for structural biology campaign planning, binder-design triage, model comparison, structure mapping, and cloud GPU stage contracts.",
    "category": "Research",
    "capabilities": [
      "Skills"
    ],
    "defaultPrompt": [
      "Use $biosymphony-structure-factory to plan a structural biology campaign."
    ]
  },
  "holManifestOrigin": "repository",
  "registryIndexVersion": 5
}

Marketplace source

Repo URL: https://github.com/BioSymphony/structure-factory
Marketplace path: Unknown
Source path: .
Install policy: Unspecified

Skills

2 SKILL.md files ship with this plugin. Preview, copy, or download each one, then install them with the Skills CLI.

skills-cli

binder-lane-round
skills/binder-lane-round/SKILL.md
Use the public Claude binder lane to plan and execute protein-binder comparisons with selected tools, compute profiles, controls, and output checks.
Raw SKILL.md
SKILL.md content is not in this snapshot. Open the raw file to copy it from the source repository.
biosymphony-structure-factory
skills/biosymphony-structure-factory/SKILL.md
Select structural biology tools, call configured adapters, chain stage outputs, and compare computational results. Use for binder-design comparisons, structure prediction, model review, and agent-driven execution.
Raw SKILL.md
SKILL.md content is not in this snapshot. Open the raw file to copy it from the source repository.

File inventory

.claude-plugin/plugin.json

file

424 bytes

cce5c1d7814286ba…

.codex-plugin/plugin.json

plugin-manifest

984 bytes

5dc0454dd0fd7007…

AGENTS.md

file

6,455 bytes

f1693a7f54514572…

README.md

file

12,966 bytes

5c0e3883ee753008…

SECURITY.md

file

1,125 bytes

7fd72897cf0eab38…

skills/binder-lane-round/references/docs/assets/workflow-ladder.svg

skill

2,589 bytes

d8d9ad87427ab997…

skills/binder-lane-round/references/docs/binder-comparison-contract.md

skill

5,062 bytes

d3bd6b628b9b4361…

skills/binder-lane-round/references/docs/binder-controls.md

skill

4,820 bytes

11729b9d9c902e7a…

skills/binder-lane-round/references/docs/binder-lane-round.md

skill

32,519 bytes

d12ae03f7529ce60…

skills/binder-lane-round/references/docs/binder-study-decision-loop.md

skill

9,236 bytes

cc00219a14c4e82d…

skills/binder-lane-round/references/docs/cli-reference.md

skill

10,830 bytes

99e97a8b84d19467…

skills/binder-lane-round/references/docs/compute-backends.md

skill

9,525 bytes

6a4b3bff355a67f4…

skills/binder-lane-round/references/docs/prediction-handoff-contract.md

skill

3,920 bytes

6e8e1797790a3378…

skills/binder-lane-round/references/docs/result-boundaries.md

skill

4,955 bytes

8b6f58db4efa3a5e…

skills/binder-lane-round/references/docs/tooling-and-licensing.md

skill

14,383 bytes

be70847d0ff257cc…

skills/binder-lane-round/references/docs/workflow-map.md

skill

9,679 bytes

f06f2603ae8020a1…

skills/binder-lane-round/references/examples/binder-controls-synthetic/control-panel.json

skill

1,884 bytes

e478b2013f354258…

skills/binder-lane-round/references/examples/binder-controls-synthetic/README.md

skill

713 bytes

14fca0080826dede…

skills/binder-lane-round/references/examples/pd-l1-binder-design-public/binder-round-request.json

skill

6,109 bytes

1c82eb9fce73541e…

skills/binder-lane-round/references/examples/pd-l1-binder-design-public/candidate-ranking.example.json

skill

2,362 bytes

3dee0aaa28954e07…

skills/binder-lane-round/references/examples/pd-l1-binder-design-public/round-history.synthetic.example.json

skill

424 bytes

288f0797e88a484e…

skills/binder-lane-round/references/modules/schemas/binder-execution-handoff.v1.schema.json

skill

7,031 bytes

e3a0abf36a4d275a…

skills/binder-lane-round/references/modules/schemas/binder-round-contract.v1.schema.json

skill

5,748 bytes

ff170d35bd5e970d…

skills/binder-lane-round/references/NON_CLAIMS.md

skill

1,602 bytes

7e0eabb9f4a6a296…

skills/binder-lane-round/references/references/binder-execution-adapters.json

skill

55,082 bytes

dbe452582bbe4676…

skills/binder-lane-round/references/references/binder-lane-capability-ledger.json

skill

17,122 bytes

6d338e30d657eaf5…

skills/binder-lane-round/references/references/published-binder-comparison-workflow.json

skill

4,806 bytes

505e857418212760…

skills/binder-lane-round/references/schemas/binder-api-adapter-contract.schema.json

skill

1,751 bytes

791e37c66cc7dd4f…

skills/binder-lane-round/references/schemas/binder-capability-ledger.schema.json

skill

1,804 bytes

0a3bdb8d34047789…

skills/binder-lane-round/references/schemas/binder-control-adoption.schema.json

skill

1,272 bytes

b8b53dc6ca129633…

skills/binder-lane-round/references/schemas/binder-control-calibration.schema.json

skill

3,236 bytes

fe2d1f6fb102d7da…

skills/binder-lane-round/references/schemas/binder-control-panel.schema.json

skill

2,266 bytes

41cd4f7f0e5db051…

skills/binder-lane-round/references/schemas/binder-controller-receipt.schema.json

skill

4,307 bytes

842ce08c670b5b15…

skills/binder-lane-round/references/schemas/binder-controller-request.schema.json

skill

8,282 bytes

d69d1a8a18f7cdeb…

skills/binder-lane-round/references/schemas/binder-execution-adapters.schema.json

skill

7,267 bytes

f2bf30350fa98671…

skills/binder-lane-round/references/schemas/binder-failure-record.schema.json

skill

4,227 bytes

68deeba3063f14e1…

skills/binder-lane-round/references/schemas/binder-metric-provenance.schema.json

skill

2,071 bytes

83a3daf653391b64…

skills/binder-lane-round/references/schemas/binder-remote-tool-receipt.schema.json

skill

2,790 bytes

91c5d21047c29f11…

skills/binder-lane-round/references/schemas/binder-remote-tool-request.schema.json

skill

3,214 bytes

aac975622a749bc9…

skills/binder-lane-round/references/schemas/binder-round-decision.schema.json

skill

2,148 bytes

07b70d9e42d57be5…

skills/binder-lane-round/references/schemas/binder-round-plan.schema.json

skill

15,107 bytes

e22edc632ddc2394…

skills/binder-lane-round/references/schemas/binder-round-report.schema.json

skill

6,363 bytes

06271bba46fe10c3…

skills/binder-lane-round/references/schemas/binder-round-request.schema.json

skill

14,808 bytes

16e9dc33d0e9cb7e…

skills/binder-lane-round/references/schemas/binder-target-verification-report.schema.json

skill

3,217 bytes

1a886f107c0ad1c7…

skills/binder-lane-round/references/tools/bindcraft2.md

skill

9,785 bytes

4df4a26ed26846ce…

skills/binder-lane-round/SKILL.md

skill

6,786 bytes

660ea08d5cecd47c…

skills/biosymphony-structure-factory/agents/openai.yaml

skill

205 bytes

0ee0f5064c8761d2…

skills/biosymphony-structure-factory/references/AGENTS.md

skill

6,514 bytes

0594f157eb4617c5…

skills/biosymphony-structure-factory/references/binder-execution-adapters.json

skill

55,082 bytes

dbe452582bbe4676…

skills/biosymphony-structure-factory/references/binder-lane-capability-ledger.json

skill

17,122 bytes

6d338e30d657eaf5…

skills/biosymphony-structure-factory/references/docs/agent-boundaries.md

skill

1,208 bytes

b3bdd0a8db636180…

skills/biosymphony-structure-factory/references/docs/agent-recipes.md

skill

5,598 bytes

3f4b1ae6fb692cd1…

skills/biosymphony-structure-factory/references/docs/agent-run-learnings.md

skill

4,507 bytes

cf06286f72fc28ba…

skills/biosymphony-structure-factory/references/docs/agentic-biology-harness.md

skill

7,321 bytes

dd3458a0e6333699…

skills/biosymphony-structure-factory/references/docs/ai-design-runtime-readiness.md

skill

14,014 bytes

73e9111c00bf7f5c…

skills/biosymphony-structure-factory/references/docs/architecture.md

skill

3,421 bytes

7944116560619a07…

skills/biosymphony-structure-factory/references/docs/assets/agent-lanes.svg

skill

5,537 bytes

308dfd2d6fffc01c…

skills/biosymphony-structure-factory/references/docs/assets/newcomer-paths.svg

skill

4,640 bytes

1911dc429901aa91…

skills/biosymphony-structure-factory/references/docs/assets/README.md

skill

2,305 bytes

4639e93b0b92735c…

skills/biosymphony-structure-factory/references/docs/assets/structure-factory-loop.svg

skill

3,965 bytes

ad4728ff0dfbbde2…

skills/biosymphony-structure-factory/references/docs/assets/system-context.svg

skill

2,575 bytes

ae85ea76c04e72e6…

skills/biosymphony-structure-factory/references/docs/assets/workflow-ladder.svg

skill

2,589 bytes

d8d9ad87427ab997…

skills/biosymphony-structure-factory/references/docs/binder-comparison-contract.md

skill

5,062 bytes

d3bd6b628b9b4361…

skills/biosymphony-structure-factory/references/docs/binder-controls.md

skill

4,820 bytes

11729b9d9c902e7a…

skills/biosymphony-structure-factory/references/docs/binder-lane-round.md

skill

32,519 bytes

d12ae03f7529ce60…

skills/biosymphony-structure-factory/references/docs/binder-study-decision-loop.md

skill

9,236 bytes

cc00219a14c4e82d…

skills/biosymphony-structure-factory/references/docs/capabilities.md

skill

9,882 bytes

e94eeaba878b8cb3…

skills/biosymphony-structure-factory/references/docs/cli-reference.md

skill

10,830 bytes

99e97a8b84d19467…

skills/biosymphony-structure-factory/references/docs/compute-backends.md

skill

9,525 bytes

6a4b3bff355a67f4…

skills/biosymphony-structure-factory/references/docs/confidence-sidecars.md

skill

3,642 bytes

5d67f8e3c0508b0d…

skills/biosymphony-structure-factory/references/docs/faq.md

skill

8,159 bytes

73b1b99f7770f79d…

skills/biosymphony-structure-factory/references/docs/genie3-boltz-demo-ideas.md

skill

5,361 bytes

6279c7b39cb6244b…

skills/biosymphony-structure-factory/references/docs/glossary.md

skill

7,117 bytes

94e7bfe03c7eef62…

skills/biosymphony-structure-factory/references/docs/install-sidecar.md

skill

1,803 bytes

f3b2fe453f05aef3…

skills/biosymphony-structure-factory/references/docs/intake-interview.md

skill

3,782 bytes

261355f910f58bbd…

skills/biosymphony-structure-factory/references/docs/linear-orchestration.md

skill

9,613 bytes

f3d5b663e99c8233…

skills/biosymphony-structure-factory/references/docs/no-false-success-hardening.md

skill

9,463 bytes

c400974e3572c975…

skills/biosymphony-structure-factory/references/docs/operational-gotchas.md

skill

33,214 bytes

6bd4e65d7642f6dc…

skills/biosymphony-structure-factory/references/docs/prediction-handoff-contract.md

skill

3,920 bytes

6e8e1797790a3378…

skills/biosymphony-structure-factory/references/docs/preflight-checklist.md

skill

16,503 bytes

fcca215f44d374e6…

skills/biosymphony-structure-factory/references/docs/privacy-and-security-model.md

skill

2,710 bytes

614e25eb3bc3865f…

skills/biosymphony-structure-factory/references/docs/public-export-shape.md

skill

4,319 bytes

94b453ae28688ba2…

skills/biosymphony-structure-factory/references/docs/public-repo-and-private-image-policy.md

skill

10,894 bytes

0dc4c5fd7904d97d…

skills/biosymphony-structure-factory/references/docs/public-switch-checklist.md

skill

3,038 bytes

514d13730e6e9851…

skills/biosymphony-structure-factory/references/docs/quickstart-tour.md

skill

6,006 bytes

4913518f45d63d40…

skills/biosymphony-structure-factory/references/docs/release-process.md

skill

1,371 bytes

aba0c6535b2d1291…

skills/biosymphony-structure-factory/references/docs/reproducibility-checks.md

skill

1,523 bytes

d352018a28890548…

skills/biosymphony-structure-factory/references/docs/result-boundaries.md

skill

4,955 bytes

8b6f58db4efa3a5e…

skills/biosymphony-structure-factory/references/docs/runpod-stack.md

skill

10,752 bytes

543207cacc2ee5ee…

skills/biosymphony-structure-factory/references/docs/scoring-invariants.md

skill

2,511 bytes

693e570eb8f80d81…

skills/biosymphony-structure-factory/references/docs/screening-superpowers.md

skill

10,581 bytes

b04ad2cb3fb5eda4…

skills/biosymphony-structure-factory/references/docs/sidecar-architecture.md

skill

1,810 bytes

c049ef0d3aa994fe…

skills/biosymphony-structure-factory/references/docs/skill-install.md

skill

1,515 bytes

60560b502b035893…

skills/biosymphony-structure-factory/references/docs/standalone-agent-workflow.md

skill

2,455 bytes

f89204a6c513549f…

skills/biosymphony-structure-factory/references/docs/tool-and-skill-radar.md

skill

13,553 bytes

0a76269405042bb7…

skills/biosymphony-structure-factory/references/docs/tooling-and-licensing.md

skill

14,383 bytes

be70847d0ff257cc…

skills/biosymphony-structure-factory/references/docs/use-cases.md

skill

15,017 bytes

14f0c77941e5ce81…

skills/biosymphony-structure-factory/references/docs/workflow-map.md

skill

9,679 bytes

f06f2603ae8020a1…

skills/biosymphony-structure-factory/references/examples/binder-controls-synthetic/control-panel.json

skill

1,884 bytes

e478b2013f354258…

skills/biosymphony-structure-factory/references/examples/binder-controls-synthetic/README.md

skill

713 bytes

14fca0080826dede…

Browse all 142 files